Salih Ulu Blog

BİLİM, EĞİTİM, TEKNOLOJİ, HOBİ

salih-MacBook-Pro:~ simacpro$ flexbar -r flexbar_qual_and_trim_lenght.fastq --post-trim-length 50 --min-read-length 50 ________ __ / ____/ /__ _ __/ /_ ____ ______ / /_ / / _ \| |/ / __ \/ __ `/ ___/ / __/ / / __/> /_/ /_/\___/_/|_/_.___/\__,_/_/ Flexbar – flexible barcode and adapter removal, version 2.5 Local time: Wed Jul 8 12:48:02 2015 Target name: flexbar File type: fastq Reads file: flexbar_qual_and_trim_lenght.fastq threads: 1 max-uncalled: 0 post-trim-length: 50 […]

Categories: Bioinformatics, Flexbar

salih-MacBook-Pro:~ simacpro$ flexbar -r data/fastq/unknown.fastq --post-trim-length 50 --min-read-length 50 ________ __ / ____/ /__ _ __/ /_ ____ ______ / /_ / / _ \| |/ / __ \/ __ `/ ___/ / __/ / / __/>

Categories: Bioinformatics, Flexbar

salih-MacBook-Pro:~ simacpro$ flexbar -r flexbar_quality_based_trim.fastq --post-trim-length 50 ________ __ / ____/ /__ _ __/ /_ ____ ______ / /_ / / _ \| |/ / __ \/ __ `/ ___/ / __/ / / __/>

Categories: Bioinformatics, Flexbar

salih-MacBook-Pro:~ simacpro$ flexbar -r data/fastq/unknown.fastq --post-trim-length 50 ________ __ / ____/ /__ _ __/ /_ ____ ______ / /_ / / _ \| |/ / __ \/ __ `/ ___/ / __/ / / __/>

Categories: Bioinformatics, Flexbar

salih-MacBook-Pro:~ simacpro$ flexbar -f i1.8 -r data/fastq/unknown.fastq --pre-trim-phred 30 ________ __ / ____/ /__ _ __/ /_ ____ ______ / /_ / / _ \| |/ / __ \/ __ `/ ___/ / __/ / / __/>

Categories: Bioinformatics, Flexbar

salih-MacBook-Pro:~ simacpro$ flexbar -r data/fastq/unknown.fastq --pre-trim-left 5 ________ __ / ____/ /__ _ __/ /_ ____ ______ / /_ / / _ \| |/ / __ \/ __ `/ ___/ / __/ / / __/>

Categories: Bioinformatics, Flexbar

salih-MacBook-Pro:~ simacpro$ flexbar -r data/fastq/unknown.fastq --max-uncalled 2 ________ __ / ____/ /__ _ __/ /_ ____ ______ / /_ / / _ \| |/ / __ \/ __ `/ ___/ / __/ / / __/>

Categories: Bioinformatics, Flexbar

salih-MacBook-Pro:~ simacpro$ flexbar -r flexbar/test/test.fasta -a flexbar/test/adapters.fasta --adapter-gap -4 ________ __ / ____/ /__ _ __/ /_ ____ ______ / /_ / / _ \| |/ / __ \/ __ `/ ___/ / __/ / / __/>

Categories: Bioinformatics, Flexbar

salih-MacBook-Pro:~ simacpro$ flexbar -r flexbar/test/test.fasta -a flexbar/test/adapters.fasta -at 2 -ao 6 -l ALL ________ __ / ____/ /__ _ __/ /_ ____ ______ / /_ / / _ \| |/ / __ \/ __ `/ ___/ / __/ / / __/>

Categories: Bioinformatics, Flexbar

salih-MacBook-Pro:~ simacpro$ flexbar -r flexbar/test/test.fasta -a flexbar/test/adapters.fasta -ao 5 -l ALL ________ __ / ____/ /__ _ __/ /_ ____ ______ / /_ / / _ \| |/ / __ \/ __ `/ ___/ / __/ / / __/>

Categories: Bioinformatics, Flexbar